English: phylogenetic tree of some known forkhead proteins, with focus on FOXA2, using Muscle for alignment in Bosque (default) and Tree Puzzle for tree building.

Ref.:

• Edgar RC (2004). "MUSCLE: multiple sequence alignment with high accuracy and high throughput". Nucleic Acids Res. 32 (5): 1792–7. DOI:10.1093/nar/gkh340. PMID 15034147. PMC: 390337.
• Schmidt HA, Strimmer K, Vingron M, von Haeseler A (March 2002). "TREE-PUZZLE: maximum likelihood phylogenetic analysis using quartets and parallel computing". Bioinformatics 18 (3): 502–4. PMID 11934758.